Hypothetical proteins

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Nazunderwent
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Hypothetical proteins

Hi all
i have a around four hypothetical protien from neisserial bacterial strain and the function of these proteins are not yet reveald
i am a new master student and trying to figure out there functions by homology
any suggestion how i would figure that out 
any suggestion how to start ? please
 

g a
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 Dear Nazunderwent

 Dear Nazunderwent

You can check for the exisitng protein structures with homology to yr proteins through UNIPROT or any such datebase.. 

Nazunderwent
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unfortuently the homolgy

unfortuently the homolgy scores is not promising
low score all the time...
any new improvements you suggest ???
thanks