Can you please suggest the name of a few freely accessible softwares for analyzing the protein interactions and their relate pathways both at gene or protein level.
I am a hardcore proteomics person and recently learnt that a few genes that can upregulate the proteins that I have identified through nLC- MS/MS. I now want to check what is regulating these proteins at the gene level.
Kindly suggest some softwares for the identification of protein interactions and pathways.
Thanking you all in anticipation